Detailed information of SNP:
|
SNP ID:
sf1217075893(Gbrowse)
Chromosome: chr12 Position: 17075893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 62.36% | 37.64% |
| All Indica | 756 | 38.62% | 61.38% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 347 | 14.41% | 85.59% |
| Indica II | 207 | 74.88% | 25.12% |
| Indica Intermediate | 202 | 43.07% | 56.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217075893 | G->A | LOC_Os12g28890(LOC_Os12g28890.1) | Non-Synonymous SNP |