Detailed information of SNP:
|
SNP ID:
sf1217080727(Gbrowse)
Chromosome: chr12 Position: 17080727 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 78.43% | 21.57% |
| All Indica | 729 | 61.18% | 38.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 328 | 35.37% | 64.63% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 193 | 76.68% | 23.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217080727 | C->T | LOC_Os12g28900(LOC_Os12g28900.1) | Synonymous |