Detailed information of SNP:
|
SNP ID:
sf1217097747(Gbrowse)
Chromosome: chr12 Position: 17097747 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 69.29% | 30.71% |
| All Indica | 765 | 95.29% | 4.71% |
| All Japonica | 463 | 20.52% | 79.48% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 195 | 94.36% | 5.64% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 319 | 1.88% | 98.12% |
| Tropical Japonica | 85 | 84.71% | 15.29% |
| Japonica Intermediate | 59 | 28.81% | 71.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217097747 | A->G | INTERGENIC | None |