Detailed information of SNP:
|
SNP ID:
sf1217100204(Gbrowse)
Chromosome: chr12 Position: 17100204 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 66.31% | 33.69% |
| All Indica | 794 | 91.94% | 8.06% |
| All Japonica | 489 | 18.40% | 81.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 65 | 30.77% | 69.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217100204 | G->A | LOC_Os12g28930(LOC_Os12g28930.1) | INTRON |