Detailed information of SNP:
|
SNP ID:
sf1217100408(Gbrowse)
Chromosome: chr12 Position: 17100408 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 66.83% | 33.17% |
| All Indica | 795 | 92.58% | 7.42% |
| All Japonica | 494 | 19.43% | 80.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217100408 | G->A | LOC_Os12g28930(LOC_Os12g28930.1) | INTRON |