Detailed information of SNP:
|
SNP ID:
sf1217102607(Gbrowse)
Chromosome: chr12 Position: 17102607 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 92.25% | 7.75% |
| All Indica | 764 | 90.58% | 9.42% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 93.54% | 6.46% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 197 | 84.77% | 15.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 74.73% | 25.27% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217102607 | C->T | LOC_Os12g28930(LOC_Os12g28930.1) | Non-Synonymous SNP |