Detailed information of SNP:
|
SNP ID:
sf1217115223(Gbrowse)
Chromosome: chr12 Position: 17115223 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.18% | 49.82% |
| All Indica | 795 | 22.89% | 77.11% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 9.92% | 90.08% |
| Indica II | 211 | 40.76% | 59.24% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217115223 | C->T | LOC_Os12g28950(LOC_Os12g28950.1) | INTRON |