Detailed information of SNP:
|
SNP ID:
sf1217115698(Gbrowse)
Chromosome: chr12 Position: 17115698 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217115698 | T->C | LOC_Os12g28950(LOC_Os12g28950.1) | Non-Synonymous SNP |