Detailed information of SNP:
|
SNP ID:
sf1217169381(Gbrowse)
Chromosome: chr12 Position: 17169381 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 59.94% | 40.06% |
| All Indica | 791 | 92.41% | 7.59% |
| All Japonica | 494 | 14.98% | 85.02% |
| Aus | 62 | 12.90% | 87.10% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217169381 | T->C | LOC_Os12g29020(LOC_Os12g29020.1) | INTRON |