Detailed information of SNP:
|
SNP ID:
sf1217169402(Gbrowse)
Chromosome: chr12 Position: 17169402 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 57.16% | 42.84% |
| All Indica | 763 | 88.73% | 11.27% |
| All Japonica | 496 | 14.72% | 85.28% |
| Aus | 61 | 11.48% | 88.52% |
| Indica I | 363 | 93.94% | 6.06% |
| Indica II | 198 | 86.36% | 13.64% |
| Indica Intermediate | 202 | 81.68% | 18.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217169402 | A->G | LOC_Os12g29020(LOC_Os12g29020.1) | INTRON |