Detailed information of SNP:
|
SNP ID:
sf1217192432(Gbrowse)
Chromosome: chr12 Position: 17192432 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 71.92% | 28.08% |
| All Indica | 786 | 97.58% | 2.42% |
| All Japonica | 480 | 24.79% | 75.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 334 | 11.38% | 88.62% |
| Tropical Japonica | 83 | 75.90% | 24.10% |
| Japonica Intermediate | 63 | 28.57% | 71.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217192432 | G->A | INTERGENIC | None |