Detailed information of SNP:
|
SNP ID:
sf1217206653(Gbrowse)
Chromosome: chr12 Position: 17206653 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.33% | 30.67% |
| All Indica | 795 | 51.32% | 48.68% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 24.73% | 75.27% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217206653 | G->A | LOC_Os12g29070(LOC_Os12g29070.1) | INTRON |