Detailed information of SNP:
|
SNP ID:
sf1217210571(Gbrowse)
Chromosome: chr12 Position: 17210571 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 67.49% | 32.51% |
| All Indica | 793 | 48.17% | 51.83% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 27.88% | 72.12% |
| Indica II | 209 | 66.03% | 33.97% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217210571 | C->T | LOC_Os12g29070(LOC_Os12g29070.1) | Non-Synonymous SNP |