Detailed information of SNP:
|
SNP ID:
sf1217229575(Gbrowse)
Chromosome: chr12 Position: 17229575 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 64.73% | 35.27% |
| All Indica | 795 | 44.15% | 55.85% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 22.52% | 77.48% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217229575 | T->C | LOC_Os12g29120(LOC_Os12g29120.1) | INTRON |