Detailed information of SNP:
|
SNP ID:
sf1217230553(Gbrowse)
Chromosome: chr12 Position: 17230553 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.59% | 30.41% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 494 | 19.23% | 80.77% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 91 | 75.82% | 24.18% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217230553 | T->G | LOC_Os12g29120(LOC_Os12g29120.1) | INTRON |