Detailed information of SNP:
|
SNP ID:
sf1217234084(Gbrowse)
Chromosome: chr12 Position: 17234084 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 63.57% | 36.43% |
| All Indica | 788 | 91.50% | 8.50% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 40 | 90.00% | 10.00% |
| Indica I | 366 | 91.26% | 8.74% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217234084 | A->G | INTERGENIC | None |