Detailed information of SNP:
|
SNP ID:
sf1217234322(Gbrowse)
Chromosome: chr12 Position: 17234322 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 90.09% | 9.91% |
| All Indica | 792 | 85.48% | 14.52% |
| All Japonica | 488 | 96.93% | 3.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 87.63% | 12.37% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 83.53% | 16.47% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217234322 | A->T | INTERGENIC | None |