Detailed information of SNP:
|
SNP ID:
sf1217251113(Gbrowse)
Chromosome: chr12 Position: 17251113 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.18% | 29.82% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 494 | 19.84% | 80.16% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 91 | 75.82% | 24.18% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217251113 | T->C | INTERGENIC | None |