Detailed information of SNP:
|
SNP ID:
sf1217251854(Gbrowse)
Chromosome: chr12 Position: 17251854 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 69.09% | 30.91% |
| All Indica | 793 | 96.97% | 3.03% |
| All Japonica | 488 | 18.03% | 81.97% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 87 | 74.71% | 25.29% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217251854 | T->C | LOC_Os12g29150(LOC_Os12g29150.1) | Non-Synonymous SNP |