Detailed information of SNP:
|
SNP ID:
sf1217295761(Gbrowse)
Chromosome: chr12 Position: 17295761 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 88.21% | 11.79% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217295761 | A->G | INTERGENIC | None |