Detailed information of SNP:
|
SNP ID:
sf1217297627(Gbrowse)
Chromosome: chr12 Position: 17297627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.10% | 12.90% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217297627 | C->T | LOC_Os12g29220(LOC_Os12g29220.1) | INTRON |