Detailed information of SNP:
|
SNP ID:
sf1217297968(Gbrowse)
Chromosome: chr12 Position: 17297968 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 79.84% | 20.16% |
| All Indica | 795 | 93.21% | 6.79% |
| All Japonica | 496 | 62.70% | 37.30% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217297968 | C->A | LOC_Os12g29220(LOC_Os12g29220.1) | INTRON |