Detailed information of SNP:
|
SNP ID:
sf1217321022(Gbrowse)
Chromosome: chr12 Position: 17321022 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.74% | 24.26% |
| All Indica | 798 | 61.90% | 38.10% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217321022 | C->T | INTERGENIC | None |