Detailed information of SNP:
|
SNP ID:
sf1217324347(Gbrowse)
Chromosome: chr12 Position: 17324347 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.90% | 24.10% |
| All Indica | 799 | 62.20% | 37.80% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217324347 | C->T | INTERGENIC | None |