Detailed information of SNP:
|
SNP ID:
sf1217335401(Gbrowse)
Chromosome: chr12 Position: 17335401 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.41% | 24.59% |
| All Indica | 799 | 59.57% | 40.43% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217335401 | T->C | INTERGENIC | None |