Detailed information of SNP:
|
SNP ID:
sf1217360813(Gbrowse)
Chromosome: chr12 Position: 17360813 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 93.70% | 6.30% |
| All Indica | 795 | 96.98% | 3.02% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217360813 | A->G | INTERGENIC | None |