Detailed information of SNP:
|
SNP ID:
sf1217364398(Gbrowse)
Chromosome: chr12 Position: 17364398 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 93.27% | 6.73% |
| All Indica | 750 | 88.27% | 11.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 85.14% | 14.86% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 192 | 86.98% | 13.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217364398 | T->A | LOC_Os12g29310(LOC_Os12g29310.1) | SNPs that disrupt stop codons |