Detailed information of SNP:
|
SNP ID:
sf1217364447(Gbrowse)
Chromosome: chr12 Position: 17364447 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.80% | 7.20% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 484 | 81.82% | 18.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 87 | 59.77% | 40.23% |
| Japonica Intermediate | 62 | 56.45% | 43.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217364447 | G->A | LOC_Os12g29310(LOC_Os12g29310.1) | Non-Synonymous SNP |