Detailed information of SNP:



SNP ID: sf1217365597(Gbrowse)

Chromosome: chr12

Position: 17365597
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 91.25% 8.75%
All Indica797 99.50% 0.50%
All Japonica497 77.06% 22.94%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II212 99.06% 0.94%
Indica Intermediate210 99.52% 0.48%
Temperate Japonica335 90.45% 9.55%
Tropical Japonica94 52.13% 47.87%
Japonica Intermediate68 45.59% 54.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217365597 C->T LOC_Os12g29310(LOC_Os12g29310.1) Synonymous