Detailed information of SNP:
|
SNP ID:
sf1217366898(Gbrowse)
Chromosome: chr12 Position: 17366898 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1244 | 93.41% | 6.59% |
| All Indica | 676 | 89.79% | 10.21% |
| All Japonica | 473 | 98.73% | 1.27% |
| Aus | 42 | 90.48% | 9.52% |
| Indica I | 315 | 89.52% | 10.48% |
| Indica II | 168 | 92.26% | 7.74% |
| Indica Intermediate | 193 | 88.08% | 11.92% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217366898 | A->G | LOC_Os12g29310(LOC_Os12g29310.1) | INTRON |