Detailed information of SNP:
|
SNP ID:
sf1217368228(Gbrowse)
Chromosome: chr12 Position: 17368228 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 92.42% | 7.58% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 490 | 79.59% | 20.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 91.87% | 8.13% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217368228 | G->A | LOC_Os12g29310(LOC_Os12g29310.1) | Non-Synonymous SNP |