Detailed information of SNP:



SNP ID: sf1217373555(Gbrowse)

Chromosome: chr12

Position: 17373555
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1417 75.94% 24.06%
All Indica797 97.49% 2.51%
All Japonica497 36.42% 63.58%
Aus67 100.00% 0.00%
Indica I375 98.13% 1.87%
Indica II212 96.70% 3.30%
Indica Intermediate210 97.14% 2.86%
Temperate Japonica335 11.34% 88.66%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 75.00% 25.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217373555 A->C INTERGENIC None