Detailed information of SNP:
|
SNP ID:
sf1217379698(Gbrowse)
Chromosome: chr12 Position: 17379698 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 93.27% | 6.73% |
| All Indica | 717 | 87.87% | 12.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 85.05% | 14.95% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 190 | 85.26% | 14.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217379698 | A->T | INTERGENIC | None |