Detailed information of SNP:
|
SNP ID:
sf1217380103(Gbrowse)
Chromosome: chr12 Position: 17380103 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 91.19% | 8.81% |
| All Indica | 788 | 89.21% | 10.79% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 369 | 94.85% | 5.15% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217380103 | T->G | INTERGENIC | None |