Detailed information of SNP:
|
SNP ID:
sf1217380107(Gbrowse)
Chromosome: chr12 Position: 17380107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 92.49% | 7.51% |
| All Indica | 793 | 90.92% | 9.08% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217380107 | C->T | INTERGENIC | None |