Detailed information of SNP:
|
SNP ID:
sf1217381436(Gbrowse)
Chromosome: chr12 Position: 17381436 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 56.97% | 43.03% |
| All Indica | 789 | 31.05% | 68.95% |
| All Japonica | 466 | 91.85% | 8.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 14.75% | 85.25% |
| Indica II | 211 | 49.76% | 50.24% |
| Indica Intermediate | 205 | 41.46% | 58.54% |
| Temperate Japonica | 304 | 97.37% | 2.63% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217381436 | G->A | INTERGENIC | None |