Detailed information of SNP:
|
SNP ID:
sf1217388848(Gbrowse)
Chromosome: chr12 Position: 17388848 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 87.64% | 12.36% |
| All Indica | 792 | 85.23% | 14.77% |
| All Japonica | 494 | 89.47% | 10.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 87.53% | 12.47% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217388848 | G->A | INTERGENIC | None |