Detailed information of SNP:
|
SNP ID:
sf1217397272(Gbrowse)
Chromosome: chr12 Position: 17397272 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 57.58% | 42.42% |
| All Indica | 757 | 61.96% | 38.04% |
| All Japonica | 489 | 42.54% | 57.46% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 349 | 59.89% | 40.11% |
| Indica II | 203 | 60.59% | 39.41% |
| Indica Intermediate | 205 | 66.83% | 33.17% |
| Temperate Japonica | 333 | 26.13% | 73.87% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 62 | 69.35% | 30.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217397272 | G->A | INTERGENIC | None |