Detailed information of SNP:
|
SNP ID:
sf1217397941(Gbrowse)
Chromosome: chr12 Position: 17397941 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1234 | 62.48% | 37.52% |
| All Indica | 653 | 52.53% | 47.47% |
| All Japonica | 495 | 71.92% | 28.08% |
| Aus | 36 | 88.89% | 11.11% |
| Indica I | 299 | 48.49% | 51.51% |
| Indica II | 171 | 66.67% | 33.33% |
| Indica Intermediate | 183 | 45.90% | 54.10% |
| Temperate Japonica | 334 | 77.54% | 22.46% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217397941 | G->A | INTERGENIC | None |