Detailed information of SNP:
|
SNP ID:
sf1217398670(Gbrowse)
Chromosome: chr12 Position: 17398670 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 92.88% | 7.12% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 460 | 96.74% | 3.26% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 325 | 98.46% | 1.54% |
| Tropical Japonica | 79 | 92.41% | 7.59% |
| Japonica Intermediate | 56 | 92.86% | 7.14% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217398670 | C->T | INTERGENIC | None |