Detailed information of SNP:
|
SNP ID:
sf1217418334(Gbrowse)
Chromosome: chr12 Position: 17418334 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 51.75% | 48.25% |
| All Indica | 788 | 55.46% | 44.54% |
| All Japonica | 466 | 46.35% | 53.65% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 203 | 48.77% | 51.23% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 333 | 29.43% | 70.57% |
| Tropical Japonica | 68 | 98.53% | 1.47% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217418334 | T->C | LOC_Os12g29350(LOC_Os12g29350.1) | INTRON |