Detailed information of SNP:
|
SNP ID:
sf1217420064(Gbrowse)
Chromosome: chr12 Position: 17420064 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.78% | 31.22% |
| All Indica | 799 | 54.19% | 45.81% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217420064 | A->C | INTERGENIC | None |