Detailed information of SNP:
|
SNP ID:
sf1217432430(Gbrowse)
Chromosome: chr12 Position: 17432430 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217432430 | C->T | INTERGENIC | None |