Detailed information of SNP:
|
SNP ID:
sf1217433710(Gbrowse)
Chromosome: chr12 Position: 17433710 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.70% | 34.30% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 17.30% | 82.70% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217433710 | T->C | INTERGENIC | None |