Detailed information of SNP:
|
SNP ID:
sf1217434166(Gbrowse)
Chromosome: chr12 Position: 17434166 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.11% | 28.89% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 32.39% | 67.61% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 28.66% | 71.34% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217434166 | T->C | INTERGENIC | None |