Detailed information of SNP:
|
SNP ID:
sf1217435092(Gbrowse)
Chromosome: chr12 Position: 17435092 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.40% | 30.60% |
| All Indica | 796 | 95.48% | 4.52% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 26.27% | 73.73% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217435092 | A->T | INTERGENIC | None |