Detailed information of SNP:
|
SNP ID:
sf1217439462(Gbrowse)
Chromosome: chr12 Position: 17439462 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.86% | 21.14% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217439462 | G->A | INTERGENIC | None |