Detailed information of SNP:
|
SNP ID:
sf1217443686(Gbrowse)
Chromosome: chr12 Position: 17443686 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 60.60% | 39.40% |
| All Indica | 689 | 78.66% | 21.34% |
| All Japonica | 477 | 33.33% | 66.67% |
| Aus | 51 | 80.39% | 19.61% |
| Indica I | 326 | 79.75% | 20.25% |
| Indica II | 179 | 79.89% | 20.11% |
| Indica Intermediate | 184 | 75.54% | 24.46% |
| Temperate Japonica | 330 | 9.70% | 90.30% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217443686 | T->C | INTERGENIC | None |