Detailed information of SNP:
|
SNP ID:
sf1217461823(Gbrowse)
Chromosome: chr12 Position: 17461823 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 75.50% | 24.50% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 495 | 36.36% | 63.64% |
| Aus | 52 | 98.08% | 1.92% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 4 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217461823 | T->G | LOC_Os12g29410(LOC_Os12g29410.1) | INTRON |