Detailed information of SNP:
|
SNP ID:
sf1217462542(Gbrowse)
Chromosome: chr12 Position: 17462542 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 75.41% | 24.59% |
| All Indica | 795 | 72.33% | 27.67% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 209 | 65.07% | 34.93% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217462542 | G->A | INTERGENIC | None |